Issue:ISSN 2095-1353
CN 11-6020/Q
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2020年57 No.3
nalysis of microsatellite loci from Calliptamus italicus (Orthopera: Acrididae) based on a transcriptome dataset
Author of the article:SANG Di;XU Ye;WANG Wei-Liang;XIANG Min;JI Rong;WANG Han
Author's Workplace:中亚区域跨境有害生物联合控制国际研究中心,新疆师范大学生命科学学院,乌鲁木齐 830054; 新疆玛纳斯县蝗虫鼠害预测预报防治站,玛纳斯 832200
Key Words:Calliptamus italicus; microsatellite; transcriptome; molecular marker
Abstract:
[Objectives] To
investigate genetic variation in Calliptamus italicus(L.), an important pest of desert and semi-desert grasslands in
Xinjiang. [Methods] Microsatellite loci were analyzed from the transcriptome
dataset of C. italicus, and primers
designed for PCR amplification. SSR loci were
identified using MISA, and primers were designed using Primer 5 for
experimental validation. [Results] In total, 156 500 SSR loci distributed in 126 369 unigenes were detected. The
majority of these were mono-nucleotides (60.88%), followed by di-nucleotides
(23.58%), tri-nucleotides (12.99%), and tetra-nucleotides (2.04%). The most abundant mono-nucleotide
repeat motif was A/T (44.38%). The dominant motif among the di-nucleotide repeat units was AC/GT (12.99%), followed by AG/CT (8.05%). 24 primer pairs were
randomly selected to validate SSR loci detected with genomic DNA from multiple
individuals from 10 different geographic populations. 6 primer pairs amplified the
expected products. [Conclusion] Based on transcriptome
data, 156 500 SSR loci were identified which can
provide a foundation for research on molecular markers, population genetics and functional genes of C. italicus.