Spatio-temporal expression profile and putative regulatory role of the Apis mellifera ligustica lncRNA17000 gene
Author of the article:KANG Jing1** REN Ya-Ping1** YE Dao-You1 WANG Ning1 CHEN Ying1 LI Zheng-Yuan1 XU Wen-Hua1 YAN
Author's Workplace:1. College of Bee Science and Biomedicine, Fujian Agriculture and Forestry University, Fuzhou 350002, China; 2. National & Local United Engineering Laboratory of Natural Biotoxin, Fuzhou 350002, China; 3. Apitherapy Research Institute of Fujian Agriculture and Forestry University, Fuzhou 350002, China
Key Words:Apis mellifera ligustica; long non-coding RNA; lncRNA17000; spatio-temporal expression profile; regulation
Abstract:
[Aim] To investigate the expression of
the lncRNA17000 gene in different tissues and developmental stages of Apis
mellifera ligustica to provide a foundation for further functional and
mechanistic studies of this gene. [Methods] The
expression of lncRNA17000 in various tissues was verified by RT-PCR, and its
relative expression in different
tissues and developmental stages was quantified using RT-qPCR. The cis, trans and competitive, endogenous RNA regulatory roles of lncRNA17000 were analyzed
using relevant software. [Results] Target fragments of the expected size were
amplified in seven tissues of worker bees, including the brain, antennae, venom
glands, midgut, epidermis, hypopharyngeal glands, and fat body. LncRNA17000 was
differentially expressed in the above seven tissues, with significantly higher
expression in the antennae than in the fat body (P<0.05). LncRNA17000
was also differentially expressed in eggs, larvae, prepupae, pupae, and adults,
with significantly higher expression in 7-day-old prepupae than in 3-day-old
larvae, 8-day-old prepupae, and 12-day-old pupae (P<0.05).
LncRNA17000 expression in 6, 12, 15 and 18-day-old adults was significantly
lower than in 1-day-old adults (P<0.05), and its expression decreased
with age. LncRNA17000 potentially regulates the transcription of seven upstream
and downstream genes and the expression of two co-expressed genes. It targets
45 miRNAs, which, in turn, target 66 mRNAs involved in 23 GO terms and 25 KEGG
pathways. [Conclusion] LncRNA17000 is widely expressed in several tissues
and developmental stages of A. m. ligustica, but was most highly expressed in the antennae,
7-day-old prepupae and 1-day-old adults. LncRNA17000 is likely to regulate the transcription of the TFIID
subunit 11 transcript variant X2 gene
in a cis-like manner, and to modulate
the expression of the pteropsin gene in a trans-like
manner. It likely targets a series of miRNAs and mRNAs, thereby further
regulating the insulin, ErbB and mTOR signaling pathways.