Bioinformatic investigation and expression of the UBCD4 gene in Apis mellifera
Author of the article:WU Bo-Wen1** ZANG He2, 3, 4** LIU Cai-Zhen1 FENG Rui-Rong1 WU Yang1 FU Zhi-Ying1 FU Zhong-Min2, 3, 4 GUO Rui2, 3, 4***
Author's Workplace:1. Fujian Vocational College of Agriculture, Fuzhou 350000, China; 2. College of Bee Science and Biomedicine, Fujian Agriculture and Forestry University, Fuzhou 350002, China; 3. National & Local United Engineering Laboratory of Natural Biotoxin, Fuzhou 350002, China; 4. Apitherapy Research Institute of Fujian Agriculture and Forestry University, Fuzhou 350002, China
Key Words:Apis mellifera; ubiquitin-conjugating enzyme E2-22 kD; bioinformatics; structural domain; expression profile
Abstract:
[Aim]
This study aims to perform bioinformatic analysis of the
ubiquitin-conjugating enzyme E2-22 kD (AmUBCD4) in Apis mellifera and
determine its expression patterns in various tissues and developmental stages
of worker bees, providing a basis for exploring its functional roles.
Bioinformatic tools were employed to analyze the physicochemical properties,
molecular structures (including secondary and tertiary structures), and protein
interaction network of AmUBCD4. Meanwhile, a comparative study was conducted on
the conserved motifs and domains of UBCD4 between A. mellifera and other
insects. A comparison of conserved motifs and structural domains in UBCD4 in A.
mellifera and other insects was also conducted. RT-qPCR was used to
evaluate the relative expression of AmUBCD4 in different worker tissues,
including the brain, hypopharyngeal gland, midgut, antenna, venom gland,
cuticle, and fat body, as well as in different developmental stages, including
eggs, larvae, pre-pupae, and pupae. [Results] AmUBCD4 consists of 199 amino
acids, with a molecular formula of C1010H1584N270O298S7.
Its molecular weight is approximately 22.50 kD, and the theoretical isoelectric
point is 5.31. The instability index of AmUBCD4 is 45.22, the half-life is 30
h, the lipid coefficient is 88.29, and the average hydrophilicity coefficient
is﹣0.303.
Additionally, AmUBCD4 contains 25 phosphorylation sites, while it lacks a
transmembrane domain and a signal peptide. AmUBCD4 putatively interacts
with 10 proteins, including Uba1 and RpL40. UBCD4 has 5 conserved motifs
common to A. mellifera and other nine insects. Both the UBA_Ⅱ_E2_UBCD4 and the UBCc structural domains are present in UBCD4 in A. mellifera, Megachile rotundata, Nasonia vitripennis, Polistes dominula, A. cerana, Bombus terrestris, A. florea and Bombyx mori. AmUBCD4 was differentially expressed in the antennae, brain, midgut, venom
gland, fat body, cuticle and hypopharyngeal gland, with the highest expression
in the cuticle and the lowest in the midgut. With respect to developmental
stages, expression was highest in eggs, and progressively decreased in
subsequent developmental stages, being lowest in 12-day-old pupae. [Conclusion] AmUBCD4 is a potential hydrophilic,
intracellular protein that is most highly expressed in the cuticle and
hypopharyngeal gland, and in egg stage, of A. mellifera workers.