Identification and bioinformatic analysis of the Phyllotreta striolata visual gene
Author of the article:WANG Xue1** XIAO Yong2 PENG Zheng-Ke2 YIN Fei2 WANG Huan-Huan2 LI Zhen-Yu2 JING Xiang-Feng1*
Author's Workplace:1. Plant Protection College, Northwest A & F University, Yangling 712100, China; 2. Guangdong Provincial Key Laboratory of High Technology Plant Protection, Key Laboratory of Green Prevention and Control of Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
Key Words: Phyllotreta striolata; opsin; transcriptome; protein structure; gene expression
Abstract:
[Aim] To identify and conduct a bioinformatic
analysis of the visual gene of Phyllotreta striolata and thereby provide
a basis for further study of phototaxis in this species. [Methods] The transcriptome was analyzed and annotated
by cDNA library construction and PacBio sequencing. BioEdit, ExPASY, TMHMM,
AlphaFold, and other software, were then used to analyze and identify the
physicochemical properties of the P. striolata opsin genes PstrOpsin-LW, PstrOpsin-UV1, PstrOpsin-UV2 and Pstr-Pteropsin, and predict
their protein structure and functional sites. Sequence analysis and
phylogenetic tree construction were performed using MEGA 7.0 software. Finally,
real-time fluorescent quantitative PCR was used to analyze the spatio-temporal
expression, and expression in each gender, of these 4 opsin genes. [Results] Four genes were identified by the
transcriptome sequencing, namely long-wave sensitive opsin PstrOpsin-LW,
ultraviolet light-sensitive opin PstrOpsin-UV1 and PstrOpsin-UV2,
and non-visual opin Pstr-Pteropsin, all of which belonged to the typical
structure of G-protein-coupled receptors. The expression levels of PstrOpsin-LW, PstrOpsin-UV1 and PstrOpsin-UV2 were significantly higher in
adults than in pupae and larvae (P<0.05), but there was no significant
difference in the expression of Pstr-Pteropsin in different instars (P>0.05). The
expression of the four genes in the head of adults was significantly higher
than in the body (P<0.05), and PstrOpsin-UV1 and Pstrosin-UV2 were highly expressed in the head of male and female
adults, respectively. [Conclusion] Four retinopsin genes were identified and
their molecular characteristics were clarified. Differences in the expression
of these genes during growth and development were revealed, which is useful
information for the prevention and control of P. striolata.